Apps for IGB

From Loraine Lab and Community Contributors

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Monster Alignment Filter

Hides alignments with extremely long gaps to filter out spurious introns in single-cell RNA-Seq data.
100.0 118 Downloads
Version: 0.0.1

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Monster Alignment Filter detects and hides alignments with suspiciously large gaps relative to the genomic sequence.

Use this App to:

  • Filter out alignments with gaps longer than a chosen threshold (default: 10,000 bases).
  • Improve clarity when viewing single-cell or bulk RNA-Seq alignments.
  • Focus on realistic splicing events by removing spurious alignments.

How to use Monster Alignment Filter App:

  1. Install the App.
  2. Open a BAM alignment track.
  3. Right-click the BAM track label and select Filter
  4. Add filter option Reads without monster gaps.
  5. Use the input field to set a maximum gap size (default: 10,000 bases).
  6. Click Apply to hide alignments with longer gaps in the selected track.

Current Version : 0.0.1

Release Date : 18 Jun, 2025

Works with IGB [10.0,11)


To install and run this App, start IGB! Then come back and refresh this page.

App Version 0.0.1
Works with IGB [10.0,11)