app_type -- How an App changes the IGB interface
Plugin -- Plugin Apps add new menus to the IGB interface
Application -- Application Apps add new windows to the IGB Interface
Panel -- Panel Apps introduced a new tabbed panel to the IGB interface
Demo -- Demo Apps show developers how to create IGB Apps
biology -- Apps categorized by biological research area
Microbial Genomics -- Apps for analysis and visualization of microbial genomic data
Plant Genomics -- Apps for analysis and visualization of genomes from photosynthetic organisms
Protein -- Apps for searching or visualizing of protein structure or function
Epigenome -- Apps for visualizing or searching DNA or histone modification diversity
Alternative Splicing -- Apps that show splicing pattern diversity
Transcriptome -- Apps that display RNA expression data
data -- Apps categorized by data formats and data types
ChIP-Seq -- Apps that display DNA sequenced from chromatin precipitation experiments
RNA-Seq -- Apps that display RNA sequence alignments, coverage graphs, and related data
Bisulfite -- Apps that display DNA from bisulfite sequencing to detect DNA methylation
DNA-Seq -- Apps that display genomic DNA sequencing results
Command Socket
by Loraine Lab
Control IGB from the command line
Geometric Mean Graph Operator
by Loraine Lab
Create a geometric mean graph from selected graphs
Get Average Score
by Shamika Kulkarni, Loraine Lab
Average selected ChIP-Seq peak scores
Merge Annotation Track Operator
by Loraine Lab
Combine items from different tracks into one track. Works on annotation tracks.
mi-bundle
by Arnaud Céol, Heiko Müller
Search and display molecular interactions
ProtAnnot
by Tarun Mall, John Eckstein, Nowlan Freese, Ann Loraine, Kaushik Gopu
Search InterPro and display motifs on gene models
Quickload Saver
by Noor Zahara, Nowlan Freese, Rachel Weidenhammer
Save custom genomes as IGB QuickLoads
SimSearch
by Arnaud Céol, Marco Masseroli
Identify and compare occurrences of (epi)genomics feature patterns in multiple genome browser tracks.
SNP File Converter
by Daniel Narmi, Nowlan Freese, Kaushik Gopu
Visualize genotype data in Integrated Genome Browser